Original Research

Documentation of Clinical Reasoning in Admission Notes of Hospitalists: Validation of the CRANAPL Assessment Rubric


OBJECTIVE: To establish a metric for evaluating hospitalists’ documentation of clinical reasoning in admission notes.
STUDY DESIGN: Retrospective study.
SETTING: Admissions from 2014 to 2017 at three hospitals in Maryland.
PARTICIPANTS: Hospitalist physicians.
MEASUREMENTS: A subset of patients admitted with fever, syncope/dizziness, or abdominal pain were randomly selected. The nine-item Clinical Reasoning in Admission Note Assessment & Plan (CRANAPL) tool was developed to assess the comprehensiveness of clinical reasoning documented in the assessment and plans (A&Ps) of admission notes. Two authors scored all A&Ps by using this tool. A&Ps with global clinical reasoning and global readability/clarity measures were also scored. All data were deidentified prior to scoring.
RESULTS: The 285 admission notes that were evaluated were authored by 120 hospitalists. The mean total CRANAPL score given by both raters was 6.4 (standard devision [SD] 2.2). The intraclass correlation measuring interrater reliability for the total CRANAPL score was 0.83 (95% CI, 0.76-0.87). Associations between the CRANAPL total score and global clinical reasoning score and global readability/clarity measures were statistically significant (P < .001). Notes from academic hospitals had higher CRANAPL scores (7.4 [SD 2.0] and 6.6 [SD 2.1]) than those from the community hospital (5.2 [SD 1.9]), P < .001.
CONCLUSIONS: This study represents the first step to characterizing clinical reasoning documentation in hospital medicine. With some validity evidence established for the CRANAPL tool, it may be possible to assess the documentation of clinical reasoning by hospitalists.

© 2019 Society of Hospital Medicine

Approximately 60,000 hospitalists were working in the United States in 2018.1 Hospitalist groups work collaboratively because of the shiftwork required for 24/7 patient coverage, and first-rate clinical documentation is essential for quality care.2 Thoughtful clinical documentation not only transmits one provider’s clinical reasoning to other providers but is a professional responsibility.3 Hospitalists spend two-thirds of their time in indirect patient-care activities and approximately one quarter of their time on documentation in electronic health records (EHRs).4 Despite documentation occupying a substantial portion of the clinician’s time, published literature on the best practices for the documentation of clinical reasoning in hospital medicine or its assessment remains scant.5-7

Clinical reasoning involves establishing a diagnosis and developing a therapeutic plan that fits the unique circumstances and needs of the patient.8 Inpatient providers who admit patients to the hospital end the admission note with their assessment and plan (A&P) after reflecting about a patient’s presenting illness. The A&P generally represents the interpretations, deductions, and clinical reasoning of the inpatient providers; this is the section of the note that fellow physicians concentrate on over others.9 The documentation of clinical reasoning in the A&P allows for many to consider how the recorded interpretations relate to their own elucidations resulting in distributed cognition.10

Disorganized documentation can contribute to cognitive overload and impede thoughtful consideration about the clinical presentation.3 The assessment of clinical documentation may translate into reduced medical errors and improved note quality.11,12 Studies that have formally evaluated the documentation of clinical reasoning have focused exclusively on medical students.13-15 The nonexistence of a detailed rubric for evaluating clinical reasoning in the A&Ps of hospitalists represents a missed opportunity for evaluating what hospitalists “do”; if this evolves into a mechanism for offering formative feedback, such professional development would impact the highest level of Miller’s assessment pyramid.16 We therefore undertook this study to establish a metric to assess the hospitalist providers’ documentation of clinical reasoning in the A&P of an admission note.


Study Design, Setting, and Subjects

This was a retrospective study that reviewed the admission notes of hospitalists for patients admitted over the period of January 2014 and October 2017 at three hospitals in Maryland. One is a community hospital (Hospital A) and two are academic medical centers (Hospital B and Hospital C). Even though these three hospitals are part of one health system, they have distinct cultures and leadership, serve different populations, and are staffed by different provider teams.

The notes of physicians working for the hospitalist groups at each of the three hospitals were the focus of the analysis in this study.

Development of the Documentation Assessment Rubric

A team was assembled to develop the Clinical Reasoning in Admission Note Assessment & PLan (CRANAPL) tool. The CRANAPL was designed to assess the comprehensiveness and thoughtfulness of the clinical reasoning documented in the A&P sections of the notes of patients who were admitted to the hospital with an acute illness. Validity evidence for CRANAPL was summarized on the basis of Messick’s unified validity framework by using four of the five sources of validity: content, response process, internal structure, and relations to other variables.17

Content Validity

The development team consisted of members who have an average of 10 years of clinical experience in hospital medicine; have studied clinical excellence and clinical reasoning; and have expertise in feedback, assessment, and professional development.18-22 The development of the CRANAPL tool by the team was informed by a review of the clinical reasoning literature, with particular attention paid to the standards and competencies outlined by the Liaison Committee on Medical Education, the Association of American Medical Colleges, the Accreditation Council on Graduate Medical Education, the Internal Medicine Milestone Project, and the Society of Hospital Medicine.23-26 For each of these parties, diagnostic reasoning and its impact on clinical decision-making are considered to be a core competency. Several works that heavily influenced the CRANAPL tool’s development were Baker’s Interpretive Summary, Differential Diagnosis, Explanation of Reasoning, And Alternatives (IDEA) assessment tool;14 King’s Pediatric History and Physical Exam Evaluation (P-HAPEE) rubric;15 and three other studies related to diagnostic reasoning.16,27,28 These manuscripts and other works substantively informed the preliminary behavioral-based anchors that formed the initial foundation for the tool under development. The CRANAPL tool was shown to colleagues at other institutions who are leaders on clinical reasoning and was presented at academic conferences in the Division of General Internal Medicine and the Division of Hospital Medicine of our institution. Feedback resulted in iterative revisions. The aforementioned methods established content validity evidence for the CRANAPL tool.

Response Process Validity

Several of the authors pilot-tested earlier iterations on admission notes that were excluded from the sample when refining the CRANAPL tool. The weaknesses and sources of confusion with specific items were addressed by scoring 10 A&Ps individually and then comparing data captured on the tool. This cycle was repeated three times for the iterative enhancement and finalization of the CRANAPL tool. On several occasions when two authors were piloting the near-final CRANAPL tool, a third author interviewed each of the two authors about reactivity while assessing individual items and exploring with probes how their own clinical documentation practices were being considered when scoring the notes. The reasonable and thoughtful answers provided by the two authors as they explained and justified the scores they were selecting during the pilot testing served to confer response process validity evidence.

Finalizing the CRANAPL Tool

The nine-item CRANAPL tool includes elements for problem representation, leading diagnosis, uncertainty, differential diagnosis, plans for diagnosis and treatment, estimated length of stay (LOS), potential for upgrade in status to a higher level of care, and consideration of disposition. Although the final three items are not core clinical reasoning domains in the medical education literature, they represent clinical judgments that are especially relevant for the delivery of the high-quality and cost-effective care of hospitalized patients. Given that the probabilities and estimations of these three elements evolve over the course of any hospitalization on the basis of test results and response to therapy, the documentation of initial expectations on these fronts can facilitate distributed cognition with all individuals becoming wiser from shared insights.10 The tool uses two- and three-point rating scales, with each number score being clearly defined by specific written criteria (total score range: 0-14; Appendix).

Data Collection

Hospitalists’ admission notes from the three hospitals were used to validate the CRANAPL tool. Admission notes from patients hospitalized to the general medical floors with an admission diagnosis of either fever, syncope/dizziness, or abdominal pain were used. These diagnoses were purposefully examined because they (1) have a wide differential diagnosis, (2) are common presenting symptoms, and (3) are prone to diagnostic errors.29-32

The centralized EHR system across the three hospitals identified admission notes with one of these primary diagnoses of patients admitted over the period of January 2014 to October 2017. We submitted a request for 650 admission notes to be randomly selected from the centralized institutional records system. The notes were stratified by hospital and diagnosis. The sample size of our study was comparable with that of prior psychometric validation studies.33,34 Upon reviewing the A&Ps associated with these admissions, 365 notes were excluded for one of three reasons: (1) the note was written by a nurse practitioner, physician assistant, resident, or medical student; (2) the admission diagnosis had been definitively confirmed in the emergency department (eg, abdominal pain due to diverticulitis seen on CT); and (3) the note represented the fourth or more note by any single provider (to sample notes of many providers, no more than three notes written by any single provider were analyzed). A total of 285 admission notes were ultimately included in the sample.

Data were deidentified, and the A&P sections of the admission notes were each copied from the EHR into a unique Word document. Patient and hospital demographic data (including age, gender, race, number of comorbid conditions, LOS, hospital charges, and readmission to the same health system within 30 days) were collected separately from the EHR. Select physician characteristics were also collected from the hospitalist groups at each of the three hospitals, as was the length (word count) of each A&P.

The study was approved by our institutional review board.

Data Analysis

Two authors scored all deidentified A&Ps by using the finalized version of the CRANAPL tool. Prior to using the CRANAPL tool on each of the notes, these raters read each A&P and scored them by using two single-item rating scales: a global clinical reasoning and a global readability/clarity measure. Both of these global scales used three-item Likert scales (below average, average, and above average). These global rating scales collected the reviewers’ gestalt about the quality and clarity of the A&P. The use of gestalt ratings as comparators is supported by other research.35

Descriptive statistics were computed for all variables. Each rater rescored a sample of 48 records (one month after the initial scoring) and intraclass correlations (ICCs) were computed for intrarater reliability. ICCs were calculated for each item and for the CRANAPL total to determine interrater reliability.

The averaged ratings from the two raters were used for all other analyses. For CRANAPL’s internal structure validity evidence, Cronbach’s alpha was calculated as a measure of internal consistency. For relations to other variables validity evidence, CRANAPL total scores were compared with the two global assessment variables with linear regressions.

Bivariate analyses were performed by applying parametric and nonparametric tests as appropriate. A series of multivariate linear regressions, controlling for diagnosis and clustered variance by hospital site, were performed using CRANAPL total as the dependent variable and patient variables as predictors.

All data were analyzed using Stata (StataCorp. 2013. Stata Statistical Software: Release 13. College Station, Texas: StataCorp LP.)


The admission notes of 120 hospitalists were evaluated (Table 1). A total of 39 (33%) physicians were moonlighters with primary appointments outside of the hospitalist division, and 81 (68%) were full-time hospitalists. Among the 120 hospitalists, 48 (40%) were female, 60 (50%) were international medical graduates, and 90 (75%) were of nonwhite race. Most hospitalist physicians (n = 47, 58%) had worked in our health system for less than five years, and 64 hospitalists (53%) devoted greater than 50% of their time to patient care.

Approximately equal numbers of patient admission notes were pulled from each of the three hospitals. The average age of patients was 67.2 (SD 13.6) years, 145 (51%) were female, and 120 (42%) were of nonwhite race. The mean LOS for all patients was 4.0 (SD 3.4) days. A total of 44 (15%) patients were readmitted to the same health system within 30 days of discharge. None of the patients died during the incident hospitalization. The average charge for each of the hospitalizations was $10,646 (SD $9,964).


Figure 1 shows the distribution of the scores given by each rater for each of the nine items. The mean of the total CRANAPL score given by both raters was 6.4 (SD 2.2). Scoring for some items were high (eg, summary statement: 1.5/2), whereas performance on others were low (eg, estimating LOS: 0.1/1 and describing the potential need for upgrade in care: 0.0/1).

Validity of the CRANAPL Tool’s Internal Structure

Cronbach’s alpha, which was used to measure internal consistency within the CRANAPL tool, was 0.43. The ICC, which was applied to measure the interrater reliability for both raters for the total CRANAPL score, was 0.83 (95% CI: 0.76-0.87). The ICC values for intrarater reliability for raters 1 and 2 were 0.73 (95% CI: 0.60-0.83) and 0.73 (95% CI: 0.45-0.86), respectively.

Relations to Other Variables Validity

Associations between CRANAPL total scores, global clinical reasoning, and global scores for note readability/clarity were statistically significant (P < .001), Figure 2.

Eight out of nine CRANAPL variables were statistically significantly different across the three hospitals (P <. 01) when data were analyzed by hospital site. Hospital C had the highest mean score of 7.4 (SD 2.0), followed by Hospital B with a score of 6.6 (SD 2.1), and Hospital A had the lowest total CRANAPL score of 5.2 (SD 1.9). This difference was statistically significant (P < .001). Five variables with respect to admission diagnoses (uncertainty acknowledged, differential diagnosis, plan for diagnosis, plan for treatment, and upgrade plan) were statistically significantly different across notes. Notes for syncope/dizziness generally yielded higher scores than those for abdominal pain and fever.

Factors Associated with High CRANAPL Scores

Table 2 shows the associations between CRANAPL scores and several covariates. Before adjustment, high CRANAPL scores were associated with high word counts of A&Ps (P < .001) and high hospital charges (P < .05). These associations were no longer significant after adjusting for hospital site and admitting diagnoses.


We reviewed the documentation of clinical reasoning in 285 admission notes at three different hospitals written by hospitalist physicians during routine clinical care. To our knowledge, this is the first study that assessed the documentation of hospitalists’ clinical reasoning with real patient notes. Wide variability exists in the documentation of clinical reasoning within the A&Ps of hospitalists’ admission notes. We have provided validity evidence to support the use of the user-friendly CRANAPL tool.

Prior studies have described rubrics for evaluating the clinical reasoning skills of medical students.14,15 The ICCs for the IDEA rubric used to assess medical students’ documentation of clinical reasoning were fair to moderate (0.29-0.67), whereas the ICC for the CRANAPL tool was high at 0.83. This measure of reliability is similar to that for the P-HAPEE rubric used to assess medical students’ documentation of pediatric history and physical notes.15 These data are markedly different from the data in previous studies that have found low interrater reliability for psychometric evaluations related to judgment and decision-making.36-39 CRANAPL was also found to have high intrarater reliability, which shows the reproducibility of an individual’s assessment over time. The strong association between the total CRANAPL score and global clinical reasoning assessment found in the present study is similar to that found in previous studies that have also embedded global rating scales as comparators when assessing clinical reasoning.13,,15,40,41 Global rating scales represent an overarching structure for comparison given the absence of an accepted method or gold standard for assessing clinical reasoning documentation. High-quality provider notes are defined by clarity, thoroughness, and accuracy;35 and effective documentation promotes communication and the coordination of care among the members of the care team.3

The total CRANAPL scores varied by hospital site with academic hospitals (B and C) scoring higher than the community hospital (A) in our study. Similarly, lengthy A&Ps were associated with high CRANAPL scores (P < .001) prior to adjustment for hospital site. Healthcare providers consider that the thoroughness of documentation denotes quality and attention to detail.35,42 Comprehensive documentation takes time; the longer notes by academic hospitalists than those by community hospitalists may be attributed to the fewer number of patients generally carried by hospitalists at academic centers than that by hospitalists at community hospitals.43

The documentation of the estimations of LOS, possibility of potential upgrade, and thoughts about disposition were consistently poorly described across all hospital sites and diagnoses. In contrast to CRANAPL, other clinical reasoning rubrics have excluded these items or discussed uncertainty.14,15,44 These elements represent the forward thinking that may be essential for high-quality progressive care by hospitalists. Physicians’s difficulty in acknowledging uncertainty has been associated with resource overuse, including the excessive ordering of tests, iatrogenic injury, and heavy financial burden on the healthcare system.45,46 The lack of thoughtful clinical and management reasoning at the time of admission is believed to be associated with medical errors.47 If used as a guide, the CRANAPL tool may promote reflection on the part of the admitting physician. The estimations of LOS, potential for upgrade to a higher level of care, and disposition are markers of optimal inpatient care, especially for hospitalists who work in shifts with embedded handoffs. When shared with colleagues (through documentation), there is the potential for distributed cognition10 to extend throughout the social network of the hospitalist group. The fact that so few providers are currently including these items in their A&P’s show that the providers are either not performing or documenting the ‘reasoning’. Either way, this is an opportunity that has been highlighted by the CRANAPL tool.

Several limitations of this study should be considered. First, the CRANAPL tool may not have captured elements of optimal clinical reasoning documentation. The reliance on multiple methods and an iterative process in the refinement of the CRANAPL tool should have minimized this. Second, this study was conducted across a single healthcare system that uses the same EHR; this EHR or institutional culture may influence documentation practices and behaviors. Given that using the CRANAPL tool to score an A&P is quick and easy, the benefit of giving providers feedback on their notes remains to be seen—here and at other hospitals. Third, our sample size could limit the generalizability of the results and the significance of the associations. However, the sample assessed in our study was significantly larger than that assessed in other studies that have validated clinical reasoning rubrics.14,15 Fourth, clinical reasoning is a broad and multidimensional construct. The CRANAPL tool focuses exclusively on hospitalists’ documentation of clinical reasoning and therefore does not assess aspects of clinical reasoning occurring in the physicians’ minds. Finally, given our goal to optimally validate the CRANAPL tool, we chose to test the tool on specific presentations that are known to be associated with diagnostic practice variation and errors. We may have observed different results had we chosen a different set of diagnoses from each hospital. Further validity evidence will be established when applying the CRANPL tool to different diagnoses and to notes from other clinical settings.

In conclusion, this study focuses on the development and validation of the CRANAPL tool that assesses how hospitalists document their clinical reasoning in the A&P section of admission notes. Our results show that wide variability exists in the documentation of clinical reasoning by hospitalists within and across hospitals. Given the CRANAPL tool’s ease-of-use and its versatility, hospitalist divisions in academic and nonacademic settings may use the CRANAPL tool to assess and provide feedback on the documentation of hospitalists’ clinical reasoning. Beyond studying whether physicians can be taught to improve their notes with feedback based on the CRANAPL tool, future studies may explore whether enhancing clinical reasoning documentation may be associated with improvements in patient care and clinical outcomes.


Dr. Wright is the Anne Gaines and G. Thomas Miller Professor of Medicine which is supported through Hopkins’ Center for Innovative Medicine.

The authors thank Christine Caufield-Noll, MLIS, AHIP (Johns Hopkins Bayview Medical Center, Baltimore, Maryland) for her assistance with this project.


The authors have nothing to disclose.


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